Erratum: Comprehensive Characterization of Cancer Driver Genes and Mutations (ARTICLE (2018) 173(2) (371–385), (S009286741830237X), (10.1016/j.cell.2018.02.060))
L Lolla, D Tamborero, S Frazer, GB Mills, S Chudamani, EM Van Allen, KJ Jeong, R Kramer, H Liang, Z Ju, Y Wu, S Reynolds, J Kim, Y Lu, L Yang, C Tokheim, CM Hutter, A Colaprico, T Knijnenburg, JN Weinstein, J Zhang, B Bernard, S Sengupta, S Cao, I Felau, JC Zenklusen, AM Hegde, A Abeshouse, D Bertrand, P Kwok-Shing Ng, ML Ferguson, N Gehlenborg, BM Broom, S Meier, KS Ng, JA Demchok, J Cho, Y Wan, A Weerasinghe, A Rao, MC Wendl, K Leinonen, C Rubio-Perez, I Shmulevich, James Engel, R Akbani, E Porta-Pardo, A Korkut, T Pihl, V Dhankani, DC Zhou, J Li, Q Gao, Q Sun, G Getz, D Voet, V Thorsson, JY Ko, MS Lawrence, M Miller, G Saksena, HJ Sofia, I Cortés-Ciriano, J Wang, DI Heiman, L Mularoni, Gregory Wolf, B Reardon, R Naresh, M Ryan, M Kasapi, N Nagarajan, R Tarnuzzer, J Armenia, S Ling, RS Kanchi, MS Noble, PJ Park, E Khurana, W Liu, MH Bailey, N Chambwe, A Gonzalez-Perez, SJ Caesar-Johnson, VD Yellapantula, JM Hess, T DeFreitas, C Suphavilai, P Lin
The Immune Landscape of Cancer
Y Liu, DL Gibbs, T Pihl, J Guinney, K Chen, L Yang, SD Brown, R Akbani, H Hu, R Tarnuzzer, S Reynolds, Laura Rozek, F Farshidfar, J Rader, H Shen, W Zhou, Thomas Carey, JA Eddy, CM Hutter, N Chambwe, A Rao, Thomas Giordano, EO Paull, R Naresh, DI Heiman, David Beer, TH Ou Yang, S Frazer, CS Pedamallu, A Lamb, CL Plaisier, D Wolf, Y Liu, J Kim, S Bullman, W Zhang, IKA Sivakumar, Z Wang, RA Holt, G Getz, JC Zenklusen, AI Ojesina, Q Sun, E Porta-Pardo, ML Ferguson, DS Bortone, TK Choueiri, R Bowlby, MS Lawrence, V Dhankani, Y Wu, AC Culhane, LE Mose, A Colaprico, S Chudamani, M Miller, L Lolla, AJ Gentles, D Anastassiou, J Saltz, JS Parker, J Liu, CE Rabkin, A Califano, NS Vo, M Kasapi, Carol Bradford, R Kramer, K Leinonen, TM Malta, G Saksena, D Bedognetti, T Knijnenburg, MS Noble, SM Reynolds, A Krasnitz, AD Cherniack, I Shmulevich, D Voet, E Ziv, Mark Prince, P Lin, R Malhotra, S Meier, Y Wan, T DeFreitas, N Gehlenborg, James Engel, V Thorsson, J Cho, JA Demchok, HJ Sofia, H Noushmehr, Gregory Wolf, B Bernard, GF Gao, JN Weinstein, SJ Caesar-Johnson, I Felau
Genomic and Functional Approaches to Understanding Cancer Aneuploidy
David Beer, L Lolla, JN Weinstein, S Frazer, GB Mills, Thomas Giordano, S Chudamani, SJ Caesar-Johnson, R Kramer, Laura Rozek, C Wang, H Liang, Z Ju, G Ha, R Akbani, Y Wu, S Reynolds, J Kim, Y Lu, L Yang, SM Phillips, T Knijnenburg, D Chakravarty, J Zhang, B Bernard, M Ladanyi, CM Hutter, I Felau, JC Zenklusen, J Cho, A Abeshouse, RS Kanchi, ML Ferguson, N Gehlenborg, BM Broom, S Meier, R Naresh, JA Demchok, AM Hegde, Y Wan, M Ryan, A Rao, K La, K Leinonen, DI Heiman, I Shmulevich, James Engel, J Armenia, GF Gao, ZJ Heins, T Pihl, V Dhankani, MG Nissan, J Li, J Gao, Q Sun, G Getz, D Voet, V Thorsson, MS Lawrence, M Miller, Mark Prince, G Saksena, SE Schumacher, BE Gross, J Liu, J Wang, F Sanchez-Vega, Carol Bradford, I de Bruijn, KS Ng, H Hu, WK Chatila, Thomas Carey, M Kasapi, AJ Lazar, Gregory Wolf, AC Berger, R Tarnuzzer, R Kundra, X Zhang, E Reznik, S Ling, J Shih, MS Noble, A Korkut, A Ochoa, W Liu, N Chambwe, AM Taylor, T DeFreitas, HJ Sofia, A Luna, P Lin
Comparative Molecular Analysis of Gastrointestinal Adenocarcinomas
BG Schneider, T Pihl, AM Hegde, L Yang, A Rao, M Islam, R Tarnuzzer, S Reynolds, I Bruijn, Laura Rozek, F Farshidfar, GB Mills, Thomas Carey, F Sanchez-Vega, CM Hutter, NS Sethi, N Chambwe, Carol Bradford, Thomas Giordano, JE Willis, AJ Lazar, J Li, DI Heiman, David Beer, S Frazer, CS Pedamallu, R Sakai, V Thorsson, A Abeshouse, W Liu, I Felau, BE Gross, S Bullman, J Zhang, CS Rabkin, BM Broom, J Wang, H Liang, JN Weinstein, RS Kanchi, J Cho, J Armenia, G Getz, JC Zenklusen, AI Ojesina, Y Liu, Q Sun, L Mishra, WK Chatila, ML Ferguson, R Bowlby, MS Lawrence, L Lolla, Y Wu, S Ling, S Chudamani, M Ryan, RS Kanchi, W Chatila, Z Ju, HJ Sofia, R Akbani, Y Wan, R Naresh, M Kasapi, R Akbani, K Leinonen, G Saksena, T Hinoue, KK Wang, T Knijnenburg, JA Seoane, MS Noble, AD Cherniack, I Shmulevich, D Voet, D Chakravarty, Mark Prince, J Kim, P Lin, KS Ng, V Dhankani, A Korkut, S Meier, R Kramer, T DeFreitas, N Gehlenborg, James Engel, SJ McCall, JA Demchok, M Miller, Gregory Wolf, B Bernard, Y Lu, SJ Caesar-Johnson, J Gao, J Kim
lncRNA Epigenetic Landscape Analysis Identifies EPIC1 as an Oncogenic lncRNA that Interacts with MYC and Promotes Cell-Cycle Progression in Cancer
W Guo, H Liang, T Pihl, AM Hegde, SO Sumer, L Yang, BS Taylor, Z Ju, R Akbani, R Tarnuzzer, S Reynolds, M Ladanyi, Laura Rozek, Y Wang, Z Wu, GB Mills, S Li, A Ochoa, P Anur, MG Nissan, Thomas Carey, CM Hutter, N Chambwe, Carol Bradford, SM Phillips, Thomas Giordano, R Naresh, J Li, DI Heiman, David Beer, S Frazer, V Thorsson, A Abeshouse, W Liu, I Felau, H Zhang, BM Broom, N Schultz, J Wang, JN Weinstein, K La, J Armenia, I Bruijn, JC Zenklusen, J Gao, Y Sun, WK Chatila, ML Ferguson, MS Lawrence, B Yang, L Lolla, Y Wu, M Peto, A Luna, G Getz, S Ling, S Chudamani, M Ryan, RS Kanchi, M Zhang, A Rao, HJ Sofia, BE Gross, Y Wan, James Engel, M Kasapi, ZJ Heins, K Leinonen, F Sanchez-Vega, G Saksena, R Sheridan, B Bernard, T Knijnenburg, L Jia, MS Noble, C Sander, I Shmulevich, D Voet, D Chakravarty, Mark Prince, P Lin, KS Ng, V Dhankani, A Korkut, S Meier, R Kramer, T DeFreitas, N Gehlenborg, J Cho, JA Demchok, M Miller, Gregory Wolf, R Kundra, Y Lu, P Spellman, SJ Caesar-Johnson, E Reznik, J Kim
Pathogenic Germline Variants in 10,389 Adult Cancers
F Al-Mulla, LB Wang, C Wang, T Pihl, AM Hegde, L Yang, D Liu, Z Ju, R Akbani, KE Houlahan, S Reynolds, Laura Rozek, GB Mills, KJ Johnson, S Cao, Thomas Carey, Mark Prince, JF McMichael, CM Hutter, N Chambwe, Carol Bradford, Thomas Giordano, R Naresh, J Li, DI Heiman, David Beer, S Frazer, V Thorsson, DC Zhou, W Liu, I Felau, W Zhang, C Oh, BM Broom, Z Wang, MA Wyczalkowski, H Liang, N Oak, J Cho, G Getz, JC Zenklusen, Q Sun, ML Ferguson, AD Scott, MS Lawrence, R Jayasinghe, A Hahn, M Ryan, Y Wu, S Ling, S Chudamani, L Lolla, RS Kanchi, DI Ritter, A Rao, HJ Sofia, Y Wan, James Engel, TB Kim, M Kasapi, K Leinonen, A Koire, G Saksena, RJ Mashl, T Knijnenburg, MS Noble, S Reynolds, AD Cherniack, J Wang, I Shmulevich, D Voet, R Tarnuzzer, KL Huang, P Lin, KS Ng, MD McLellan, V Dhankani, A Korkut, S Meier, R Kramer, T DeFreitas, N Gehlenborg, YW Kim, Y Wu, JA Demchok, M Miller, Gregory Wolf, B Bernard, M Paczkowska, Y Lu, M Krassowski, V Hucthagowder, SJ Caesar-Johnson, J Kim
Cell-of-Origin Patterns Dominate the Molecular Classification of 10,000 Tumors from 33 Types of Cancer
David Beer, B Bernard, KA Hoadley, R Akbani, G Saksena, AG Robertson, Y Wan, S Frazer, James Engel, J Wang, Gregory Wolf, L Yang, G Getz, S Chudamani, J Kim, BM Broom, N Chambwe, D Chakravarty, A Rao, AM Hegde, Y Lu, AM Taylor, A Korkut, T Pihl, MS Lawrence, J Gao, I Felau, MS Lawrence, T DeFreitas, R Kramer, T Knijnenburg, S Ling, S Reynolds, R Naresh, J Li, Carol Bradford, J Cho, Z Ju, ZJ Heins, W Liu, N Gehlenborg, H Liang, Thomas Giordano, M Wiznerowicz, J Zhang, KS Ng, K Leinonen, DI Heiman, JC Zenklusen, ML Ferguson, SJ Caesar-Johnson, BG Schneider, H Noushmehr, JN Weinstein, Mark Prince, P Lin, F Sanchez-Vega, R Bowlby, A Abeshouse, L Lolla, Q Sun, BE Gross, R Shen, E Drill, I Shmulevich, Laura Rozek, D Voet, HJ Sofia, I de Bruijn, V Dhankani, J Armenia, MS Noble, V Thorsson, WK Chatila, TM Malta, M Ryan, CK Wong, T Hinoue, C Yau, AD Cherniack, R Tarnuzzer, DM Wolf, M Kasapi, M Miller, GB Mills, Thomas Carey, CM Hutter, S Meier, Y Wu, RS Kanchi, AJ Lazar, JA Demchok, R Akbani
An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics
H Liang, T Pihl, CD Shriver, DA Levine, SO Sumer, L Yang, Z Ju, KA Hoadley, R Akbani, R Tarnuzzer, S Reynolds, M Ladanyi, Laura Rozek, L Omberg, LM Poisson, GB Mills, I de Bruijn, A Ochoa, MG Nissan, Thomas Carey, CM Hutter, N Chambwe, J Liu, SM Phillips, Thomas Giordano, AJ Lazar, J Li, DI Heiman, David Beer, S Frazer, AM Hegde, A Abeshouse, DM Wolf, W Liu, I Felau, J Zhang, BM Broom, N Schultz, J Wang, K La, AJ Kovatich, R Naresh, JN Weinstein, J Armenia, G Getz, JC Zenklusen, J Gao, Y Sun, WK Chatila, ML Ferguson, MS Lawrence, L Lolla, Y Wu, A Luna, S Ling, S Chudamani, M Ryan, RS Kanchi, A Rao, HJ Sofia, BE Gross, Y Wan, CC Benz, M Kasapi, Carol Bradford, ZJ Heins, K Leinonen, F Sanchez-Vega, G Saksena, James Engel, R Sheridan, B Bernard, T Knijnenburg, MS Noble, C Sander, AD Cherniack, I Shmulevich, D Voet, D Chakravarty, Mark Prince, P Lin, KS Ng, V Dhankani, A Korkut, S Meier, R Kramer, T DeFreitas, N Gehlenborg, T Lichtenberg, V Thorsson, J Cho, JA Demchok, M Miller, Gregory Wolf, R Kundra, Y Lu, AV Lee, SJ Caesar-Johnson, E Reznik, J Kim
Machine Learning Identifies Stemness Features Associated with Oncogenic Dedifferentiation
T Burzykowski, T Pihl, AM Hegde, L Yang, Z Ju, AJ Lazar, R Akbani, T DeFreitas, R Tarnuzzer, TM Malta, M Ladanyi, Laura Rozek, AK Godwin, L Omberg, L Poisson, GB Mills, I de Bruijn, A Ochoa, MG Nissan, Thomas Carey, CM Hutter, N Chambwe, A Luna, Carol Bradford, SM Phillips, Thomas Giordano, O Gevaert, J Li, DI Heiman, David Beer, S Frazer, V Thorsson, A Abeshouse, W Liu, I Felau, J Zhang, BM Broom, J Wang, H Liang, JN Weinstein, J Armenia, S Ling, JC Zenklusen, J Gao, Q Sun, L Mishra, WK Chatila, ML Ferguson, S Mazurek, MS Lawrence, L Lolla, Y Wu, A Sokolov, K La, G Getz, A Colaprico, S Chudamani, M Ryan, RS Kanchi, AJ Gentles, A Rao, HJ Sofia, BE Gross, Y Wan, R Naresh, M Kasapi, ZJ Heins, K Leinonen, G Saksena, R Kundra, T Knijnenburg, MS Noble, J Huelsken, A Krasnitz, I Shmulevich, D Voet, D Chakravarty, Mark Prince, P Lin, KS Ng, B Kamińska, V Dhankani, S Reynolds, A Korkut, S Meier, R Kramer, P Czerwińska, N Gehlenborg, James Engel, J Cho, JA Demchok, M Miller, H Heyn, Gregory Wolf, B Bernard, Y Lu, JN Weinstein, SJ Caesar-Johnson, J Kim
A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples
H Liang, T Pihl, AM Hegde, H Chen, SO Sumer, L Yang, BS Taylor, Z Ju, C Li, R Akbani, R Tarnuzzer, S Reynolds, M Ladanyi, Laura Rozek, GB Mills, I de Bruijn, A Ochoa, P Anur, MG Nissan, Thomas Carey, CM Hutter, N Chambwe, Carol Bradford, SM Phillips, Thomas Giordano, R Naresh, J Li, DI Heiman, David Beer, S Frazer, V Thorsson, A Abeshouse, W Liu, I Felau, H Zhang, BM Broom, N Schultz, J Wang, JN Weinstein, K La, J Armenia, G Getz, JC Zenklusen, J Gao, Y Sun, WK Chatila, ML Ferguson, Z Zhou, MS Lawrence, L Lolla, Y Wu, M Peto, A Luna, S Ling, S Chudamani, M Ryan, RS Kanchi, A Rao, HJ Sofia, BE Gross, Y Wan, James Engel, M Kasapi, ZJ Heins, K Leinonen, F Sanchez-Vega, G Saksena, R Sheridan, B Bernard, T Knijnenburg, MS Noble, C Sander, I Shmulevich, D Voet, D Chakravarty, Mark Prince, P Lin, KS Ng, V Dhankani, A Korkut, S Meier, R Kramer, T DeFreitas, N Gehlenborg, J Cho, JA Demchok, M Miller, Gregory Wolf, R Kundra, Y Lu, JN Weinstein, P Spellman, SJ Caesar-Johnson, X Peng, E Reznik, J Kim
Oncogenic Signaling Pathways in The Cancer Genome Atlas
C Huang, T Pihl, MJ Frederick, H Shen, Y Liu, R Naresh, Y Wan, Gary Hammer, A Iavarone, S Meier, I Bahceci, Y Xiao, R Kundra, M Mina, WK Chatila, F Sanchez-Vega, SJ Caesar-Johnson, M Kasapi, S Saghafinia, L Lolla, D Voet, AD Tward, Q Gao, B Gross, V Dhankani, ML Ferguson, C Kandoth, J Kim, I Shmulevich, N Gehlenborg, G Saksena, S Chudamani, T DeFreitas, Y Wu, H Zhang, David Beer, B Bernard, Carol Bradford, J Cho, F Daian, AH Berger, J Gao, MS Lawrence, U Dogrusoz, C Wang, HJ Sofia, R Kramer, L Ding, TG Bivona, Q Sun, S Frazer, A Luna, Laura Rozek, M Miller, P Lin, DL Liu, L Dervishi, LN Kwong, S Dimitriadoy, W Zhou, CS Greene, KC La, Thomas Carey, JA Demchok, Gregory Wolf, N Chambwe, PW Laird, JC Zenklusen, T Knijnenburg, G McArthur, HS Kantheti, Mark Prince, H Liang, L Yang, James Engel, A Ochoa, G Getz, SM Foltz, DI Heiman, Thomas Giordano, K Leinonen, MH Bailey, CM Hutter, D Chakravarty, Z Heins, H Zhang, R Tarnuzzer, AJ Lazar, T Giordano, I Felau, Z Wang, J Armenia, WW Liang, GP Way, M Meyerson, MS Noble, F McCormick
Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas
Y Liu, C Benz, C Coarfa, KL Mungall, T Pihl, KY Tsai, A Schultz, CM Gay, E Drill, R Tarnuzzer, CJ Creighton, Laura Rozek, JS Rader, Gregory Wolf, C Yau, HS Chiu, H Shen, R Naresh, V Walter, Thomas Carey, CM Hutter, H Cheng, J Chen, R Shen, AJ Lazar, P Sumazin, DI Heiman, David Beer, S Frazer, CS Pedamallu, AM Taylor, J Liu, J Kim, S Bullman, H Zhang, P Lin, Z Wang, AG Robertson, C Wang, P Gunaratne, RS Kanchi, J Shih, G Getz, Thomas Giordano, JC Zenklusen, AI Ojesina, Q Sun, AK Rustgi, ML Ferguson, K Brennan, R Bowlby, MS Lawrence, L Yang, ER Flores, DN Hayes, Y Wu, AD Cherniack, LA Byers, S Chudamani, L Lolla, HJ Sofia, R Akbani, Y Wan, O Gevaert, JH Zhou, H Fan, G Saksena, JD Campbell, Carol Bradford, MS Noble, L Donehower, D Voet, S Sadeghi, Mark Prince, CK Wong, M Prunello, R Zuna, J Wang, H Al-Ahmadie, S Meier, T DeFreitas, N Gehlenborg, James Engel, TW Chen, A Hegde, J Cho, JA Demchok, M Kasapi, B Bernard, W Ma, L Diao, SJ Caesar-Johnson, P Anur, I Felau
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